CARP - Convex Clustering

CARP (Convex Clustering via Algorithmic Regularization Paths) is a fast method for convex clustering.

CARP()

Compute CARP (Convex Clustering) Solution Path

plot(<CARP>)

Visualize the results of Convex Clustering (CARP)

get_cluster_labels() get_cluster_centroids() get_clustered_data()

Get Clustering Results for CARP

print(<CARP>) as.dendrogram(<CARP>) as.hclust(<CARP>)

Print CARP Results

convex_clustering()

Compute Convex Clustering Solution Path on a User-Specified Grid

CBASS - Convex BiClustering

CBASS (Convex BiClustering via algorithmic regularization with Small Steps) is a fast method for convex bi-clustering.

CBASS()

Compute CBASS (Convex BiClustering) Solution Path

plot(<CBASS>)

Visualize the results of Convex BiClustering (CBASS)

get_cluster_labels(<CBASS>) get_cluster_centroids(<CBASS>) get_clustered_data(<CBASS>)

Get Clustering Results for CBASS

print(<CBASS>) as.dendrogram(<CBASS>) as.hclust(<CBASS>)

Print CBASS Results

convex_biclustering()

Compute Convex BiClustering Solution Path on a User-Specified Grid

Weights

Functions to calculate fusion weights for CARP and CBASS

dense_rbf_kernel_weights() sparse_rbf_kernel_weights()

Construct Clustering Weights Based on the Radial Basis Function (Gaussian/Euclidean) Kernel

Miscellaneous

Other functions and data provided by clustRviz

presidential_speech

Log transformed word count of presidential speeches

authors

Word Count Data from Four English-Language Authors

tcga_breast

Log-Transformed Level III RPKM Gene Expression Levels for 438 Breast-Cancer Patients

clustRviz_logger_level()

ClustRViz Package Logging Functionality

clustRviz_options() clustRviz_reset_options()

ClustRViz Options